Компиляция GDCM с VTK и OPENJPEG

Я успешно скомпилировал GDCM 2.4.4 и VTK 5.10.1 на сервере Ubuntu 14.04. Но теперь мне нужно использовать изображения JPEG2000, и моя программа, использующая GDCM и VTK, очень медленная. Итак, я решил перекомпилировать GDCM с библиотекой OPENJPEG 1.5 (alredy compiled), но по какой-то причине она не закончена.Компиляция GDCM с VTK и OPENJPEG

А потом спросить у меня три папки:

OPENJPEG_INCLUDE_DIR = /opt/ipv/3d/utils/openjpeg-1.5.2-Linux-i386/include/openjpeg-1.5 
OPENJPEG_LIBRARY = /opt/ipv/3d/utils/openjpeg-1.5.2-Linux-i386/lib/libopenjpeg.so 
OpenJPEG_DIR = /opt/ipv/3d/utils/openjpeg-1.5.2-Linux-i386/lib/openjpeg-1.5

Я даю ему правильные папки, а затем у меня есть эта ошибка после выполнения «сделать» для GDCM:

..... 
    [ 56%] building gdcm.jar 
[ 56%] Built target GDCMJavaJar 
Linking CXX shared library ../../bin/libgdcmDSED.so 
[ 56%] Built target gdcmDSED 
Scanning dependencies of target gdcmIOD 
[ 57%] [ 57%] [ 57%] [ 57%] [ 57%] Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmMacro.cxx.o 
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[ 58%] Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmNestedModuleEntries.cxx.o          
[ 58%] Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmIODEntry.cxx.o             
Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmTableReader.cxx.o              
[ 58%] Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmTable.cxx.o              
[ 58%] [ 58%] [ 58%] Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmSeries.cxx.o          
Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmDefs.cxx.o                
Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmDefinedTerms.cxx.o              
[ 59%] [ 59%] Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmEnumeratedValues.cxx.o         
Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmStudy.cxx.o               
[ 59%] [ 59%] Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmPatient.cxx.o           
Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmType.cxx.o                
[ 59%] Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmUsage.cxx.o              
[ 60%] Building CXX object Source/InformationObjectDefinition/CMakeFiles/gdcmIOD.dir/gdcmIOD.cxx.o              
Linking CXX shared library ../../bin/libgdcmIOD.so 
[ 60%] Built target gdcmIOD 
Scanning dependencies of target gdcmDICT 
[ 60%] [ 61%] [ 61%] Building CXX object Source/DataDictionary/CMakeFiles/gdcmDICT.dir/gdcmDictEntry.cxx.o 
[ 61%] [ 61%] Building CXX object Source/DataDictionary/CMakeFiles/gdcmDICT.dir/gdcmDicts.cxx.o               
[ 61%] [ 62%] [ 62%] Building CXX object Source/DataDictionary/CMakeFiles/gdcmDICT.dir/gdcmDefaultDicts.cxx.o           
Building CXX object Source/DataDictionary/CMakeFiles/gdcmDICT.dir/gdcmPrivateDefaultDicts.cxx.o               
Building CXX object Source/DataDictionary/CMakeFiles/gdcmDICT.dir/gdcmGlobal.cxx.o                  
Building CXX object Source/DataDictionary/CMakeFiles/gdcmDICT.dir/gdcmGroupDict.cxx.o                 
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Building CXX object Source/DataDictionary/CMakeFiles/gdcmDICT.dir/gdcmUIDs.cxx.o                   
[ 62%] Building CXX object Source/DataDictionary/CMakeFiles/gdcmDICT.dir/gdcmSOPClassUIDToIOD.cxx.o              
[ 62%] Building CXX object Source/DataDictionary/CMakeFiles/gdcmDICT.dir/gdcmCSAHeaderDefaultDicts.cxx.o             
Linking CXX shared library ../../bin/libgdcmDICT.so 
[ 62%] Built target gdcmDICT 
Scanning dependencies of target gdcmMSFF 
[ 63%] [ 63%] [ 63%] [ 63%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmFileStreamer.cxx.o 
[ 63%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmJSON.cxx.o              
[ 64%] [ 64%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmAnonymizer.cxx.o           
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Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmFileAnonymizer.cxx.o             
Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmIconImageFilter.cxx.o             
Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmIconImageGenerator.cxx.o            
[ 64%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmDICOMDIRGenerator.cxx.o           
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[ 64%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmFileExplicitFilter.cxx.o           
[ 64%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmFileDerivation.cxx.o            
[ 65%] [ 65%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmImageFragmentSplitter.cxx.o        
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[ 65%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmSimpleSubjectWatcher.cxx.o          
[ 65%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmAnonymizeEvent.cxx.o            
[ 65%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmPixmap.cxx.o              
[ 66%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmBitmap.cxx.o              
[ 66%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmRescaler.cxx.o             
[ 66%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmImageToImageFilter.cxx.o           
[ 66%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmBitmapToBitmapFilter.cxx.o          
[ 66%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmPixmapToPixmapFilter.cxx.o          
[ 67%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmImageChangeTransferSyntax.cxx.o         
[ 67%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmImageApplyLookupTable.cxx.o          
[ 67%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmOrientation.cxx.o            
[ 67%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmDataSetHelper.cxx.o            
[ 67%] [ 67%] [ 68%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmImageChangePlanarConfiguration.cxx.o    
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[ 68%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmSorter.cxx.o              
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[ 69%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmDICOMDIR.cxx.o             
[ 69%] [ 69%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmSpectroscopy.cxx.o          
Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmEncapsulatedDocument.cxx.o            
[ 69%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmSplitMosaicFilter.cxx.o           
[ 69%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmFiducials.cxx.o             
[ 70%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmWaveform.cxx.o             
[ 70%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmPersonName.cxx.o             
[ 70%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmIconImage.cxx.o             
[ 70%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmUIDGenerator.cxx.o            
[ 70%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmUUIDGenerator.cxx.o            
[ 71%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmPrinter.cxx.o             
[ 71%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmDictPrinter.cxx.o            
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[ 72%] [ 72%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmImageReader.cxx.o           
Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmPixmapWriter.cxx.o              
[ 72%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmImageWriter.cxx.o            
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Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmJPEG12Codec.cxx.o              
[ 74%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmRLECodec.cxx.o             
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[ 74%] [ 74%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmJPEG16Codec.cxx.o           
Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmJPEGLSCodec.cxx.o              
[ 75%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmJPEG8Codec.cxx.o             
[ 75%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmJPEGCodec.cxx.o             
[ 75%] [ 75%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmPVRGCodec.cxx.o           
Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmKAKADUCodec.cxx.o              
[ 75%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmPNMCodec.cxx.o             
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[ 77%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmPixelFormat.cxx.o            
[ 77%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmSegmentedPaletteColorLookupTable.cxx.o       
[ 77%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmStreamImageReader.cxx.o           
[ 77%] [ 78%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmImageRegionReader.cxx.o         
Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmDirectoryHelper.cxx.o 
[ 78%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmSegment.cxx.o 
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[ 78%] [ 78%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmMeshPrimitive.cxx.o 
Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmSegmentWriter.cxx.o 
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[ 79%] [ 79%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmSegmentHelper.cxx.o 
Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/gdcmJPEG2000Codec.cxx.o 
[ 80%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/__/__/Utilities/gdcmrle/rle.cxx.o 
[ 80%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/__/__/Utilities/gdcmrle/info.cxx.o 
[ 80%] Building CXX object Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/__/__/Utilities/gdcmrle/io.cxx.o 
Linking CXX shared library ../../bin/libgdcmMSFF.so 
/opt/ipv/3d/utils/openjpeg-1.5.2-Linux-i386/lib/libopenjpeg.so.1.5.2: error adding symbols: File in wrong format 
collect2: error: ld returned 1 exit status 
make[2]: *** [bin/libgdcmMSFF.so.2.4.4] Error 1 
make[1]: *** [Source/MediaStorageAndFileFormat/CMakeFiles/gdcmMSFF.dir/all] Error 2 
make: *** [all] Error 2 
cp: cannot stat ‘/opt/ipv/3d/utils/gdcm-build/bin/vtkgdcm.jar’: No such file or directory 
[email protected]:/opt/ipv/3d/utils$

Что может Я делаю? Должен ли я использовать другую библиотеку для быстрого открытия JPEG2000?

источник

2015-06-03 user4970092

Я изменил папки – user4970092

Когда вы включаете: GDCM_USE_SYSTEM_OPENJPEG (это настройка для продвинутого пользователя). CMake проверит вашу систему и будет искать файлы конфигурации OpenJPEG * .cmake. В моем случае (установка Debian Jessie по умолчанию), они находятся здесь:

/usr/lib/x86_64-linux-gnu/openjpeg-1.5/OpenJPEGTargets-none.cmake 
/usr/lib/x86_64-linux-gnu/openjpeg-1.5/OpenJPEGTargets.cmake 
/usr/lib/x86_64-linux-gnu/openjpeg-1.5/OpenJPEGConfig.cmake

Это означает, что при настройке GDCM с CMake, файл автоматически найден и значение OpenJPEG_DIR устанавливается автоматически: /usr/lib/x86_64-linux-gnu/openjpeg-1.5

Я не понимаю, почему FindOpenJPEG.cmake будет искать OPENJPEG_LIBRARY, но это должно указывать на библиотеку вместо каталога. Например: OPENJPEG_LIBRARY должен /usr/lib/x86_64-linux-gnu/libopenjpeg.so

источник

2015-06-04 07:11:51 malat

Хорошо, я решил, используя автоматическую установку для openjpeg:

cmake . 
make 
sudo make install

Но программа все еще занимает много времени, как и раньше, чтобы открыть JPEG2000 изображения ..

источник

2015-06-05 14:49:11 user4970092

ответ

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