3
Я пытаюсь установить пакет flowCore (Bioconductor 3.4) в R 3.3.2 (Ubuntu 14.04 LTS). Но я получаю следующую ошибку. Может ли кто-нибудь предложить какое-то решение.Ошибка при установке пакета flowCore R
boost_regex/regex.cpp:195:64: error: use of deleted function ‘std::atomic<_Tp*>::atomic(const std::atomic<_Tp*>&) [with _Tp = void]’
mem_block_cache block_cache = { 0, 0, BOOST_STATIC_MUTEX_INIT, };
^
In file included from /home/nitin/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/regex/v4/mem_block_cache.hpp:31:0,
from boost_regex/regex.cpp:44:
/usr/include/c++/4.8/atomic:298:7: error: declared here
atomic(const atomic&) = delete;
^
boost_regex/regex.cpp:195:64: error: use of deleted function ‘std::atomic<_Tp*>::atomic(const std::atomic<_Tp*>&) [with _Tp = void]’
mem_block_cache block_cache = { 0, 0, BOOST_STATIC_MUTEX_INIT, };
^
In file included from /home/nitin/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/regex/v4/mem_block_cache.hpp:31:0,
from boost_regex/regex.cpp:44:
/usr/include/c++/4.8/atomic:298:7: error: declared here
atomic(const atomic&) = delete;
^
boost_regex/regex.cpp:195:64: error: could not convert ‘{{{0, 0, 0, 0, 0, 0, 0, {0, 0}}}}’ from ‘<brace-enclosed initializer list>’ to ‘std::atomic<void*>’
mem_block_cache block_cache = { 0, 0, BOOST_STATIC_MUTEX_INIT, };
^
make: *** [boost_regex/regex.o] Error 1
ERROR: compilation failed for package ‘flowCore’
* removing ‘/home/nitin/R/x86_64-pc-linux-gnu-library/3.3/flowCore’
ERROR: dependency ‘flowCore’ is not available for package ‘flowAI’
* removing ‘/home/nitin/R/x86_64-pc-linux-gnu-library/3.3/flowAI’
The downloaded source packages are in
‘/tmp/RtmpTbmU8h/downloaded_packages’
installation path not writeable, unable to update packages: mgcv, survival
Warning messages:
1: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘flowCore’ had non-zero exit status
2: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘flowAI’ had non-zero exit status
Я не могу воспроизвести это в подобной системе, используя 'BiocInstaller :: biocLite (" flowCore ")'. Ошибка связана с повышением? У вас есть усиление? http://stackoverflow.com/questions/12578499/how-to-install-boost-on-ubuntu или, возможно, пакет BH https://cran.r-project.org/web/packages/BH/index.html – user20650
То же самое ошибка для меня на Ubuntu 16.04, с R 3.3.1 и Bioconductor 3.3 с установкой 'biocLite (" flowCore ")'. – bli
Для меня подобные подобные проблемы возникают, когда библиотека разработки отсутствует. Попробуйте установить ускорение разработки сначала https://launchpad.net/ubuntu/trusty/+package/libboost-regex-dev –